Hiroki Shimizu

Find an error

Name:
Organization: National Institute of Advanced Industrial Science and Technology (AIST)
Department: Department of Chemistry and Chemical Biology
Title:

TOPICS

Co-reporter:Izuru Nagashima, Hiroki Shimizu
Tetrahedron 2014 70(19) pp: 3146-3154
Publication Date(Web):
DOI:10.1016/j.tet.2014.03.058
Co-reporter:Izuru Nagashima, Toshiki Mine, Takeshi Yamamoto, Hiroki Shimizu
Carbohydrate Research 2012 Volume 358() pp:31-36
Publication Date(Web):1 September 2012
DOI:10.1016/j.carres.2012.06.007
Enzymatic synthesis of oligosaccharides using specific sialyltransferases enables single-step glycosylation with high positional and anomeric structural selectivity. The α2,3-sialyltransferase cloned from the marine bacterium Photobacterium sp. JT-ISH-224 has unique and broad acceptor specificity, but this enzyme possesses not only sialyltransferase activity but also sialidase activity. To synthesize sialoside derivative effectively, only sialyltransferase activity is required. We report here that addition of organic solvents was effective to control the sialidase activity and a resulting product was not hydrolyzed. The enzyme was even active in the presence of acetonitrile, ethanol, methanol, or acetone. To determine the suitable concentrations of these organic solvents, only sialyltransferase activity could be allowed, and as a result, the stable synthesis of sialoside could be achieved.Graphical abstractHighlights► α2,3-Sialyltransferase (JT-ISH-224) possesses also sialidase activity. ► The enzyme was even active in the presence of water-soluble organic solvents. ► Water-soluble organic solvents mean acetonitrile, ethanol, methanol, or acetone. ► Only sialyltransferase activity was allowed in the presence of the organic solvents.
Co-reporter:Keiichi Yamada, Izuru Nagashima, Masakazu Hachisu, Ichiro Matsuo, Hiroki Shimizu
Tetrahedron Letters 2012 Volume 53(Issue 9) pp:1066-1070
Publication Date(Web):29 February 2012
DOI:10.1016/j.tetlet.2011.12.069
Cyclic RGD peptides are potent antagonists for the αvβ3 integrin receptor. In this Letter, microwave-assisted solid-phase synthesis of cyclic RGD peptides is described. In a coupling reaction between Fmoc-Arg(Pbf)-OH and high-loading H-Gly-Trt(2-Cl) resin, multiple coupling reactions were required for completion under the conventional HBTU activation. We found that the use of COMU, a new coupling reagent, under microwave heating to 50 °C accelerated the reaction even inside the resin. This method was applicable to the synthesis of linear pentapeptides, H-Asp(OtBu)-Xxx-Yyy-Arg(Pbf)-Gly-OH (Xxx = d-Phe(p-Br) or d-Tyr, Yyy = Lys(Boc) or MeVal). Cyclization of these peptides followed by deprotection gave the desired cyclic RGD peptides with high purity.
Co-reporter:Santosh L. Gaonkar, Hiroki Shimizu
Tetrahedron 2010 66(18) pp: 3314-3317
Publication Date(Web):
DOI:10.1016/j.tet.2010.03.006
aurachin RE
Ethanamine, 2-(2-azidoethoxy)-
SIALYLGLYCOPEPTIDE
Uridine 5'-(trihydrogendiphosphate), P'-a-D-galactopyranosylester
1,4-Naphthalenedione,2-methyl-3-[(2E,6E,10E,14E)-3,7,11,15,19-pentamethyl-2,6,10,14,18-eicosapentaen-1-yl]-
2-HEPTYL-1-HYDROXYQUINOLIN-4-ONE
4(1H)-Quinolinone,1-hydroxy-2-methyl-3-[(2E,6E)-3,7,11-trimethyl-2,6,10-dodecatrien-1-yl]-
4(1H)-Quinolinone,2-methyl-3-[(2E,6E)-3,7,11-trimethyl-2,6,10-dodecatrien-1-yl]-